PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29055_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HD-ZIP
Protein Properties Length: 402aa    MW: 44639.1 Da    PI: 8.9495
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29055_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182785357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Neem_29055_f_1 27 KYVRYTAEQVEALERVYLECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85
                    56789****************************************************97 PP

2bZIP_119.81.8e-06791211860
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l 
  Neem_29055_f_1  79 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLV 121
                     9***************************************985 PP

3START158.74.7e-501653722204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++a   +e+l+d++ W +++++ e+      g  g+++l 
  Neem_29055_f_1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPA-KIAEILKDRPSWFRDCRSLEVFTMFPAGnaGTIELL 258
                     7899******************************************************.7777777777*****************99******* PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vR+e+lpSg+li+p+++g+s + +v+h +l++++++++lr+l+
  Neem_29055_f_1 259 YTQAYAPTTLAPaRDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNpaaAAQFVRGEMLPSGYLIRPCEGGGSIIRIVDHLNLEAWSVPEVLRPLY 353
                     **************************************98888888899********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + +++++ a+l++ +
  Neem_29055_f_1 354 ESSKVVAQRMTIAALRYIR 372
                     **************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-18782IPR009057Homeodomain-like
PROSITE profilePS5007115.2892286IPR001356Homeobox domain
SMARTSM003895.9E-152490IPR001356Homeobox domain
SuperFamilySSF466891.41E-162589IPR009057Homeodomain-like
CDDcd000863.87E-152787No hitNo description
PfamPF000464.4E-162885IPR001356Homeobox domain
CDDcd146862.31E-579118No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-483132No hitNo description
PROSITE profilePS5084827.544155383IPR002913START domain
CDDcd088755.11E-69159375No hitNo description
Gene3DG3DSA:3.30.530.207.3E-20164350IPR023393START-like domain
SMARTSM002344.8E-40164374IPR002913START domain
SuperFamilySSF559611.92E-33164376No hitNo description
PfamPF018521.3E-47165372IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAMVMQQQQQ RESSSGSINK HQLDSGKYVR YTAEQVEALE RVYLECPKPS SLRRQQLIRE  60
CPILANIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VCENGYMRQQ LHTAPATTDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PAKIAEILKD RPSWFRDCRS  240
LEVFTMFPAG NAGTIELLYT QAYAPTTLAP ARDFWTLRYT TTLDNGSLVV CERSLSGSGA  300
GPNPAAAAQF VRGEMLPSGY LIRPCEGGGS IIRIVDHLNL EAWSVPEVLR PLYESSKVVA  360
QRMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4659082e-44AM465908.2 Vitis vinifera contig VV78X255096.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488084.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLD7SKZ00.0D7SKZ0_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein